Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs71526081 chr7:128717234 AAT/A 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs7157618 chr14:71010166 C/T 1.3E-5 134 38.2 66.9 21.43 KM Plot
TGCT rs71581958 chr7:128665542 C/T 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs71581969 chr7:128722237 C/A 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs71601701 chr4:58371005 G/C 0 132 42.18 53.83 0.5 KM Plot
TGCT rs71611998 chr4:47463698 A/C 0.000131 133 45.83 36.37 51.6 KM Plot
TGCT rs71629245 chr3:172409691 C/G 0.000108 130 45.1 37.7 25.57 KM Plot
TGCT rs71765744 chr6:42671817 AAC/A 4.45E-6 127 40.08 51.67 23.82 KM Plot
TGCT rs7195150 chr16:82843203 T/A 5.14E-9 131 45.1 28.8 20.6 KM Plot
TGCT rs7202650 chr16:27810548 A/C 1.15E-5 132 46.3 33.55 17.27 KM Plot
TGCT rs7219042 chr17:39354740 T/C 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs72237767 chr2:221242849 GAATC/G 1.96E-5 134 45.47 16.82 94.85 KM Plot
TGCT rs723190 chr12:6063974 A/G 6.52E-7 134 45.1 36.63 66.8 KM Plot
TGCT rs7246993 chr19:37890154 C/T 1.37E-13 134 45.47 37.53 17.1 KM Plot
TGCT rs7252099 chr19:37933780 G/A 1.76E-13 133 45.47 36.12 17.1 KM Plot